Publications

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Selected papers are below. For a full list of papers, please see Google Scholar.

Machine learning (ML)-assisted statistical inference

Machine learning is making predictions with uncertainty. How to make statistically rigorous scientific discovery with these "black-box" predictions?

Task-Agnostic Machine Learning-Assisted Inference
Miao J. and Lu Q. (2024).
Submitted
[Preprint] [Software: PSPS]

Valid Inference for Machine Learning-Assisted GWAS
Miao J., Wu Y., Sun Z., Miao X., Lu T., Zhao J., Lu Q. (2024).
Submitted
--Winner of the 2024 ICSA Student Paper Award
[Preprint] [Software: POP-TOOLS] [Summary]

Assumption-Lean and Data-Adaptive Post-Prediction Inference
Miao J.*, Miao X.*, Wu Y., Zhao J., Lu Q. (2023).
Submitted
[Preprint] [Software: POPInf]


Heterogeneous treatment effect, gene-environment interactions, and genetic modifier

Transcriptome-Level Interpretation of Gene-by-Sex Interactions for Human Complex Traits
Miao J.*, Wu Y.*, Yang X., Schmitz L., Lu Q. (2024).
--Winner of the 2023 Charles J. Epstein Trainee Award for Excellence in Human Genetics Research Semifinalist

Reimagining Gene-Environment Interaction Analysis for Human Complex Traits
Miao J., Song G., Wu Y., Hu J., Wu Y., Basu S., Andrews J., Schaumberg K., Fletcher J., Schmitz L., Lu Q. (2022).
Submitted
[Preprint] [Software: PIGEON] [Summary]

A Quantile Integral Linear Model to Quantify Genetic Effects on Phenotypic Variability
Miao J., Lin Y., Wu Y., Zheng B., Schmitz L., Fletcher J., Lu Q. (2022).
--Winner of the 2022 ASA Section on Statistics in Genomics and Genetics Student Paper Award
PNAS
[Journal] [Preprint] [Software: QUAIL] [Summary]


Generalizability and fairness of genetically-informed risk prediction across diverse contexts

Quantifying Portable Genetic Effects and Improving Cross-Ancestry Genetic Prediction with GWAS Summary Statistics
Miao J.*, Guo H.*, Song G., Zhao Z., Hou L., Lu Q. (2023).
Nature Communications
[Journal] [Preprint] [Software: X-Wing] [Summary]